| 1 | PEN to DXB Dubai, United Arab Emirates | 3,274 mi | ~7h 20m | flydubai | weekly |
| 2 | PEN to TAO Qingdao, China | 2,487 mi | ~5h 43m | Qingdao | 3×/wk |
| 3 | PEN to PVG Shanghai, China | 2,267 mi | ~5h 16m | Juneyao, Shanghai, and Spring | 2-3/day |
| 4 | PEN to TPE Taipei, Taiwan | 1,948 mi | ~4h 36m | China | 1/day |
| 5 | PEN to XMN Xiamen, China | 1,781 mi | ~4h 15m | Xiamen | 1/day |
| 6 | PEN to TFU Tianfu, China | 1,748 mi | ~4h 11m | Sichuan Airlines | 1/day |
| 7 | PEN to KWE Guiyang, China | 1,529 mi | ~3h 44m | Malindo Air | 1/day |
| 8 | PEN to CAN Guangzhou, China | 1,522 mi | ~3h 43m | China Southern | 2-3/day |
| 9 | PEN to SZX Shenzhen, China | 1,501 mi | ~3h 41m | Shenzhen and AirAsia | 1-2/day |
| 10 | PEN to HKG Hong Kong, Hong Kong SAR China | 1,487 mi | ~3h 39m | Hong Kong Express and Cathay Pacific | 2-3/day |
| 11 | PEN to MAA Chennai, India | 1,470 mi | ~3h 37m | IndiGo | 1/day |
| 12 | PEN to KMG Kunming, China | 1,371 mi | ~3h 25m | Malindo Air | 1/day |
| 13 | PEN to SUB Surabaya, Indonesia | 1,229 mi | ~3h 7m | Indonesia AirAsia | 1/day |
| 14 | PEN to BKI Kota Kinabalu, Malaysia | 1,086 mi | ~2h 49m | AirAsia | 2-3/day |
| 15 | PEN to CGK Jakarta, Indonesia | 904 mi | ~2h 27m | TransNusa, Indonesia AirAsia, and Malindo Air | 4-5/day |
| 16 | PEN to RGN Yangon, Myanmar (Burma) | 850 mi | ~2h 20m | Myanmar International | 3×/wk |
| 17 | PEN to KCH Kuching, Malaysia | 743 mi | ~2h 7m | AirAsia | 2-3/day |
| 18 | PEN to DMK Bangkok, Thailand | 596 mi | ~1h 49m | Thai AirAsia | 2/day |
| 19 | PEN to BKK Bangkok, Thailand | 580 mi | ~1h 47m | Thai Airways | 1/day |
| 20 | PEN to SGN Ho Chi Minh City, Vietnam | 579 mi | ~1h 47m | AirAsia | 1/day |
| 21 | PEN to SIN Singapore, Singapore | 374 mi | ~1h 21m | Singapore Airlines, Scoot, and AirAsia | 14-15/day |
| 22 | PEN to JHB Senai, Malaysia | 344 mi | ~1h 18m | AirAsia | 3-4/day |
| 23 | PEN to BTJ Banda Aceh, Sumatra Island, Indonesia | 334 mi | ~1h 16m | Firefly | 1/day |
| 24 | PEN to HKT Phuket, Thailand | 237 mi | ~1h 4m | Firefly and AirAsia | 1-2/day |
| 25 | PEN to KUL Kuala Lumpur, Malaysia | 202 mi | ~1h | AirAsia, Malaysia Airlines, and Malindo Air | 23/day |