| Sapporo (CTS) New Chitose Airport | Japan | 509 mi | 1h 38m | All Nippon Airways, Japan Airlines, and Skymark | 56-57/day |
| Fukuoka (FUK) Fukuoka Airport | Japan | 548 mi | 1h 43m | All Nippon Airways, Japan Airlines, and Skymark | 55-56/day |
| Naha (OKA) Naha Airport | Japan | 966 mi | 2h 35m | All Nippon Airways, Japan Airlines, and Skymark | 34-35/day |
| Osaka (ITM) Osaka International Airport | Japan | 251 mi | 1h 6m | All Nippon Airways, Japan Airlines, and Advanced Air | 30/day |
| Kagoshima (KOJ) Kagoshima Airport | Japan | 581 mi | 1h 47m | All Nippon Airways, Japan Airlines, and Skymark | 22/day |
| Kumamoto (KMJ) Kumamoto Airport | Japan | 543 mi | 1h 42m | All Nippon Airways, Japan Airlines, and Solaseed Air | 18/day |
| Miyazaki (KMI) Miyazaki Airport | Japan | 542 mi | 1h 42m | All Nippon Airways, Japan Airlines, and Solaseed Air | 16-17/day |
| Hiroshima (HIJ) Hiroshima Airport | Japan | 396 mi | 1h 24m | All Nippon Airways and Japan Airlines | 14-15/day |
| Nagasaki (NGS) Nagasaki Airport | Japan | 592 mi | 1h 48m | All Nippon Airways, Japan Airlines, and Solaseed Air | 14-15/day |
| Kitakyushu (KKJ) Kitakyushu Airport | Japan | 510 mi | 1h 38m | All Nippon Airways, StarFlyer, and Japan Airlines | 14/day |
| Oita (OIT) Oita Airport | Japan | 480 mi | 1h 34m | All Nippon Airways, Japan Airlines, and Solaseed Air | 14/day |
| Takamatsu (TAK) Takamatsu Airport | Japan | 339 mi | 1h 17m | Japan Airlines and All Nippon Airways | 13/day |
| Osaka (KIX) Kansai International Airport | Japan | 268 mi | 1h 8m | All Nippon Airways, Japan Airlines, and StarFlyer | 12-13/day |
| Matsuyama (MYJ) Matsuyama Airport | Japan | 419 mi | 1h 27m | All Nippon Airways and Japan Airlines | 12/day |
| Ube (UBJ) Yamaguchi Ube Airport | Japan | 495 mi | 1h 36m | All Nippon Airways, Japan Airlines, and StarFlyer | 10/day |
| Nankoku (KCZ) Kochi Ryoma Airport | Japan | 374 mi | 1h 21m | All Nippon Airways and Japan Airlines | 10/day |
| Okayama City (OKJ) Okayama Airport | Japan | 339 mi | 1h 17m | All Nippon Airways and Japan Airlines | 10/day |
| Hakodate (HKD) Hakodate Airport | Japan | 433 mi | 1h 29m | All Nippon Airways, Japan Airlines, and Air Do | 9/day |
| Tokushima (TKS) Tokushima Airport | Japan | 309 mi | 1h 13m | Japan Airlines and All Nippon Airways | 9/day |
| Akita (AXT) Akita Airport | Japan | 282 mi | 1h 10m | All Nippon Airways and Japan Airlines | 9/day |
| Kobe (UKB) Kobe Airport | Japan | 265 mi | 1h 8m | Skymark and All Nippon Airways | 8-9/day |
| Kanazawa (KMQ) Komatsu Airport | Japan | 197 mi | 59m | Japan Airlines and All Nippon Airways | 7-8/day |
| Asahikawa (AKJ) Asahikawa Airport | Japan | 579 mi | 1h 47m | Japan Airlines, All Nippon Airways, and Air Do | 7/day |
| Obihiro (OBO) Tokachi-Obihiro Airport | Japan | 529 mi | 1h 41m | Japan Airlines, All Nippon Airways, and Air Do | 7/day |
| Kushiro (KUH) Kushiro Airport | Japan | 568 mi | 1h 45m | Japan Airlines, All Nippon Airways, and Air Do | 6/day |
| Aomori (AOJ) Aomori Airport | Japan | 361 mi | 1h 20m | Japan Airlines | 6/day |
| Yonago (YGJ) Miho Yonago Airport | Japan | 368 mi | 1h 21m | All Nippon Airways | 5-6/day |
| Ozora (MMB) Memanbetsu Airport | Japan | 621 mi | 1h 52m | Japan Airlines, All Nippon Airways, and Air Do | 5/day |
| Saga (HSG) Saga Airport | Japan | 565 mi | 1h 45m | All Nippon Airways | 5/day |
| Izumo (IZO) Izumo Airport | Japan | 388 mi | 1h 23m | Japan Airlines | 5/day |
| Tottori (TTJ) Tottori Airport | Japan | 316 mi | 1h 14m | All Nippon Airways | 5/day |
| Ishigaki (ISG) Ishigaki Airport | Japan | 1,210 mi | 3h 5m | All Nippon Airways and Japan Airlines | 4/day |
| Misawa (MSJ) Misawa Air Base | Japan | 366 mi | 1h 20m | Japan Airlines | 4/day |
| Shonai (SYO) Shonai Airport | Japan | 225 mi | 1h 3m | All Nippon Airways | 4/day |
| Miyako City (MMY) Miyako Airport | Japan | 1,139 mi | 2h 56m | All Nippon Airways and Japan Airlines | 3/day |
| Odate (ONJ) Odate Noshiro Airport | Japan | 322 mi | 1h 15m | All Nippon Airways | 3/day |
| Shirahama (SHM) Nanki Shirahama Airport | Japan | 283 mi | 1h 10m | Japan Airlines | 3/day |
| Nagoya (NGO) Chubu Centrair International Airport | Japan | 175 mi | 57m | Japan Airlines and All Nippon Airways | 3/day |
| Hachijojima (HAC) Hachijojima Airport | Japan | 168 mi | 56m | All Nippon Airways | 3/day |
| Toyama (TOY) Toyama Airport | Japan | 163 mi | 55m | All Nippon Airways | 3/day |
| Wakkanai (WKJ) Wakkanai Airport | Japan | 689 mi | 2h | All Nippon Airways | 2/day |
| Masuda (IWJ) Iwami Airport | Japan | 455 mi | 1h 31m | All Nippon Airways | 2/day |
| Yamagata (GAJ) Yamagata Airport | Japan | 200 mi | 1h | Japan Airlines | 2/day |
| Wajima (NTQ) Noto Airport | Japan | 197 mi | 59m | All Nippon Airways | 2/day |
| SHI (SHI) Shimojishima Airport | Japan | 1,143 mi | 2h 57m | Skymark | 1/day |
| Amami (ASJ) Amami Airport | Japan | 767 mi | 2h 10m | Japan Airlines | 1/day |
| Monbetsu (MBE) Monbetsu Airport | Japan | 634 mi | 1h 54m | All Nippon Airways | 1/day |
| Nakashibetsu (SHB) Nakashibetsu Airport | Japan | 619 mi | 1h 52m | All Nippon Airways | 1/day |
| Tokyo (NRT) Narita International Airport | Japan | 37 mi | 40m | Cathay Pacific and Spring Airlines Japan | weekly |