| Lapu-Lapu City (CEB) Mactan Cebu International Airport | Philippines | 352 mi | 1h 19m | Cebu Pacific Air, Philippine Airlines, and Philippines AirAsia | 34-35/day |
| Malay (MPH) Godofredo P. Ramos Airport | Philippines | 189 mi | 58m | Cebu Pacific Air, Philippines AirAsia, and Philippine Airlines | 26-27/day |
| Davao City (DVO) Francisco Bangoy International Airport | Philippines | 599 mi | 1h 49m | Cebu Pacific Air, Philippine Airlines, and PAL Express and Airphil Express | 23-24/day |
| Bacolod City (BCD) Bacolod-Silay City International Airport | Philippines | 291 mi | 1h 11m | Cebu Pacific Air, Philippine Airlines, and Philippines AirAsia | 20-21/day |
| Iloilo City (ILO) Iloilo International Airport | Philippines | 273 mi | 1h 9m | Cebu Pacific Air, Philippines AirAsia, and Philippine Airlines | 19/day |
| Tacloban City (TAC) Daniel Z. Romualdez Airport | Philippines | 352 mi | 1h 19m | Cebu Pacific Air, Philippines AirAsia, and Philippine Airlines | 16-17/day |
| Laguindingan (CGY) Laguindingan Intl | Philippines | 469 mi | 1h 33m | Cebu Pacific Air, Philippine Airlines, and Philippines AirAsia | 16-17/day |
| Hong Kong (HKG) Chek Lap Kok International Airport | Hong Kong SAR China | 712 mi | 2h 3m | Cathay Pacific, Cebu Pacific Air, and Philippine Airlines | 15-16/day |
| Singapore (SIN) Singapore Changi International Airport | Singapore | 1,476 mi | 3h 38m | Singapore Airlines, Philippine Airlines, and Cebu Pacific Air | 12-13/day |
| Taipei (TPE) Taiwan Taoyuan International Airport | Taiwan | 730 mi | 2h 5m | EVA Air, Cebu Pacific Air, and China | 11-12/day |
| Seoul (ICN) Incheon International Airport | South Korea | 1,621 mi | 3h 56m | Korean Air, Asiana Airlines, and Cebu Pacific Air | 10/day |
| Butuan City (BXU) Bancasi Airport | Philippines | 488 mi | 1h 35m | Cebu Pacific Air, Philippine Airlines, and PAL Express and Airphil Express | 9-10/day |
| Puerto Princesa City (PPS) Puerto Princesa Airport | Philippines | 363 mi | 1h 20m | Cebu Pacific Air, Philippine Airlines, and PAL Express and Airphil Express | 9-10/day |
| Dumaguete City (DGT) Sibulan Airport | Philippines | 389 mi | 1h 23m | Cebu Pacific Air, Philippine Airlines, and PAL Express and Airphil Express | 9-10/day |
| Zamboanga City (ZAM) Zamboanga International Airport | Philippines | 529 mi | 1h 40m | Cebu Pacific Air, Philippine Airlines, and PAL Express and Airphil Express | 9-10/day |
| Daraga (DRP) Legazpi Bicol International Airport | Philippines | 203 mi | 1h | Cebu Pacific Air, Philippine Airlines, and PAL Express and Airphil Express | 9-10/day |
| Bangkok (BKK) Suvarnabhumi Airport | Thailand | 1,359 mi | 3h 23m | Philippine Airlines, Cebu Pacific Air, and Thai Airways | 7-8/day |
| Kuala Lumpur (KUL) Kuala Lumpur International Airport | Malaysia | 1,547 mi | 3h 47m | Malaysia Airlines, AirAsia, and Philippine Airlines | 6-7/day |
| General Santos (GES) General Santos International Airport | Philippines | 646 mi | 1h 55m | Cebu Pacific Air and Philippine Airlines | 6-7/day |
| Tokyo (NRT) Narita International Airport | Japan | 1,896 mi | 4h 30m | Cebu Pacific Air, Philippine Airlines, and All Nippon Airways | 5-6/day |
| Roxas City (RXS) Roxas Airport | Philippines | 232 mi | 1h 4m | Cebu Pacific Air, Philippine Airlines, and PAL Express and Airphil Express | 4-5/day |
| Hanoi (HAN) Noi Bai International Airport | Vietnam | 1,102 mi | 2h 51m | Cebu Pacific Air, Philippine Airlines, and Vietnam | 4-5/day |
| Guangzhou (CAN) Guangzhou Baiyun International Airport | China | 794 mi | 2h 13m | China Southern and Cebu Pacific Air | 4-5/day |
| Ho Chi Minh City (SGN) Tan Son Nhat International Airport | Vietnam | 1,001 mi | 2h 39m | Cebu Pacific Air, Philippine Airlines, and Vietnam | 4/day |
| Kalibo (KLO) Kalibo International Airport | Philippines | 216 mi | 1h 2m | Philippines AirAsia and Cebu Pacific Air | 4/day |
| Laoag City (LAO) Laoag International Airport | Philippines | 256 mi | 1h 7m | Philippine Airlines, PAL Express and Airphil Express, and Cebu Pacific Air | 3-4/day |
| Tuguegarao City (TUG) Tuguegarao Airport | Philippines | 222 mi | 1h 2m | Cebu Pacific Air, Philippine Airlines, and PAL Express and Airphil Express | 3-4/day |
| Tokyo (HND) Tokyo International Airport | Japan | 1,862 mi | 4h 25m | Philippine Airlines, All Nippon Airways, and Japan Airlines | 3-4/day |
| Da Nang (DAD) Da Nang International Airport | Vietnam | 861 mi | 2h 22m | Cebu Pacific Air, Philippines AirAsia, and Philippine Airlines | 3-4/day |
| Dubai (DXB) Dubai International Airport | United Arab Emirates | 4,291 mi | 9h 26m | Emirates | 3-4/day |
| Osaka (KIX) Kansai International Airport | Japan | 1,637 mi | 3h 58m | Philippine Airlines, Cebu Pacific Air, and Jetstar Japan | 3-4/day |
| Pagadian City (PAG) Pagadian Airport | Philippines | 490 mi | 1h 36m | Cebu Pacific Air | 3/day |
| Ozamiz City (OZC) Labo Airport | Philippines | 477 mi | 1h 34m | Cebu Pacific Air and Philippine Airlines | 3/day |
| Xiamen (XMN) Xiamen Gaoqi International Airport | China | 718 mi | 2h 4m | Xiamen and Philippine Airlines | 2-3/day |
| Cauayan City (CYZ) Cauayan Airport | Philippines | 174 mi | 57m | Cebu Pacific Air, Philippine Airlines, and PAL Express and Airphil Express | 2-3/day |
| Shanghai (PVG) Shanghai Pudong International Airport | China | 1,150 mi | 2h 57m | Cebu Pacific Air, Philippine Airlines, and China Eastern | 2-3/day |
| Doha (DOH) Hamad International Airport | Qatar | 4,525 mi | 9h 55m | Qatar Airways | 2-3/day |
| Bali (DPS) Ngurah Rai (Bali) International Airport | Indonesia | 1,656 mi | 4h | Cebu Pacific Air and Philippine Airlines | 2-3/day |
| Macao (MFM) Macau International Airport | Macao SAR China | 718 mi | 2h 4m | Philippines AirAsia and Cebu Pacific Air | 2-3/day |
| Cotabato City (CBO) Awang Airport | Philippines | 552 mi | 1h 43m | Philippine Airlines and PAL Express and Airphil Express | 2-3/day |
| Riyadh (RUH) King Khaled International Airport | Saudi Arabia | 4,833 mi | 10h 33m | Philippine Airlines, Saudia, and Cebu Pacific Air | 2-3/day |
| Dipolog City (DPL) Dipolog Airport | Philippines | 437 mi | 1h 29m | Cebu Pacific Air, PAL Express and Airphil Express, and Philippine Airlines | 2-3/day |
| Nagoya (NGO) Chubu Centrair International Airport | Japan | 1,715 mi | 4h 7m | Cebu Pacific Air and Philippine Airlines | 2/day |
| Kaohsiung City (KHH) Kaohsiung International Airport | Taiwan | 559 mi | 1h 44m | Philippines AirAsia, Cebu Pacific Air, and China | 2/day |
| Abu Dhabi (AUH) Abu Dhabi International Airport | United Arab Emirates | 4,340 mi | 9h 32m | Etihad Airways | 1-2/day |
| Jakarta (CGK) Soekarno-Hatta International Airport | Indonesia | 1,732 mi | 4h 9m | Philippine Airlines and Cebu Pacific Air | 1-2/day |
| Quanzhou (JJN) Quanzhou Airport | China | 728 mi | 2h 5m | Xiamen and Philippine Airlines | 1-2/day |
| Beijing (PEK) Beijing Capital International Airport | China | 1,787 mi | 4h 16m | Air China and Philippine Airlines | 1-2/day |
| Bangkok (DMK) Don Mueang International Airport | Thailand | 1,367 mi | 3h 24m | Cebu Pacific Air and Philippines AirAsia | 1-2/day |
| Fukuoka (FUK) Fukuoka Airport | Japan | 1,444 mi | 3h 34m | Philippine Airlines and Cebu Pacific Air | 1-2/day |
| Shenzhen (SZX) Shenzhen Bao'an International Airport | China | 733 mi | 2h 6m | SF Airlines and Shenzhen | 1-2/day |
| Manama (BAH) Bahrain International Airport | Bahrain | 4,579 mi | 10h 2m | Gulf Air | 1/day |
| Muscat (MCT) Muscat International Airport | Oman | 4,115 mi | 9h 4m | Oman Air | 1/day |
| New Delhi (DEL) Indira Gandhi International Airport | India | 2,966 mi | 6h 42m | Air India | 1/day |
| Bandar Seri Begawan (BWN) Brunei International Airport | Brunei | 780 mi | 2h 12m | Royal Brunei and Cebu Pacific Air | 1/day |
| Virac (VRC) Virac Airport | Philippines | 223 mi | 1h 3m | Cebu Pacific Air | 1/day |
| Jeddah (JED) King Abdulaziz International Airport | Saudi Arabia | 5,341 mi | 11h 36m | Saudia | 1/day |
| Kuwait City (KWI) Kuwait International Airport | Kuwait | 4,723 mi | 10h 20m | Kuwait | 1/day |
| Chongqing (CKG) Chongqing Jiangbei International Airport | China | 1,394 mi | 3h 28m | Air China and Xiamen | 4×/wk |
| Nanning (NNG) Nanning Wuxu Airport | China | 1,010 mi | 2h 40m | Royal Air Charter | 1/day |
| Kota Kinabalu (BKI) Kota Kinabalu International Airport | Malaysia | 682 mi | 1h 59m | Philippines AirAsia | 1/day |
| Tianfu (TFU) Chengdu/Tianfu Airport | China | 1,516 mi | 3h 43m | Air China | 3×/wk |
| Krong Ta Khmau (KTI) Techo International Airport | Cambodia | 1,106 mi | 2h 52m | PAL Express and Airphil Express | 3×/wk |
| Yiwu (YIW) Yiwu Airport | China | 1,027 mi | 2h 42m | China Postal Airlines | 3×/wk |
| Hangzhou (HGH) Hangzhou Xiaoshan International Airport | China | 1,087 mi | 2h 50m | Xiamen | 2×/wk |
| Changsha (CSX) Changsha Huanghua Airport | China | 1,069 mi | 2h 47m | Qingdao | 2×/wk |
| Fuzhou (FOC) Fuzhou Changle International Airport | China | 794 mi | 2h 13m | China Postal Airlines | weekly |